{"id":560,"date":"2011-06-03T14:40:11","date_gmt":"2011-06-03T18:40:11","guid":{"rendered":"http:\/\/blogs.vassar.edu\/vaol\/"},"modified":"2013-07-15T10:02:59","modified_gmt":"2013-07-15T14:02:59","slug":"dynamic-diffraction-analysis","status":"publish","type":"page","link":"https:\/\/pages.vassar.edu\/vaol\/past-research-projects\/2011-2\/dynamic-diffraction-analysis\/","title":{"rendered":"Dynamic Diffraction Analysis"},"content":{"rendered":"

Pages written by Michael Lueckheide ’13<\/em><\/p>\n

Dynamic Diffraction Analysis<\/h2>\n

The dynamic diffraction analysis began as a project to determine whether a three-dimensional technique using laser light to study biological systems could be an inexpensive and accurate alternative to microscopy. \u00a0The diffraction patterns created by a laser beam traveling through an optical cuvette of C. elegans <\/em>can be used to study the movement and position of the worms as the pass through the beam of light.<\/p>\n

\"\"<\/a>
Initial Diffraction Data Collection Set-Up<\/figcaption><\/figure>\n

Initially video data of the diffraction patterns of the worms was taken. \u00a0Matlab was used to model the possible orientations of the worms and the fast Fourier Transform of the model worms resulted in a modeled diffraction pattern that could be compared to the raw video data.<\/p>\n

\"\"<\/a>
Matlab Modeled Worm Orientation and Resulting Diffraction Image<\/figcaption><\/figure>\n
\"\"<\/a>
Actual Image of a Diffraction Pattern taken from the Video Data<\/figcaption><\/figure>\n

Next \u00a0more control was exerted over how much space the worms had to move by using 1mm, 2mm, and 5mm cuvettes. \u00a0The density of worms in the cuvettes was also controlled and more video data was taken. \u00a0This video data was analyzed using logger pro and the average thrashing frequency and standard deviation was determined for each cuvette.<\/p>\n

\"\"<\/a>
Example of a Logger Pro graph of angular frequency vs. time<\/figcaption><\/figure>\n

The logger pro method was fairly time intensive, so an automated technique using a oscilloscope connected the the computer was developed to allow for a faster analysis and determination of thrashing frequency. \u00a0The automated technique also appears to reveal information about the worm shape as it is moving through the laser beam.<\/p>\n

\"\"<\/a>
Diffraction Pattern Waveform taken from the Oscilloscope Data<\/figcaption><\/figure>\n

Based on initial frequency values it would appear the thrashing frequency of C. elegans<\/em> is affected by how constrained their motion is, meaning whether they are crawling, slipping\/sliding, or actually swimming.<\/p>\n

Check out<\/p>\n

http:\/\/pages.vassar.edu\/vaol\/2011\/05\/25\/c-elegans-summer-2011\/<\/a><\/p>\n

to view up to date information on the project.<\/p>\n","protected":false},"excerpt":{"rendered":"

Pages written by Michael Lueckheide ’13 Dynamic Diffraction Analysis The dynamic diffraction analysis began as a project to determine whether a three-dimensional technique using laser light to study biological systems could be an inexpensive and accurate alternative to microscopy. \u00a0The diffraction patterns created by a laser beam traveling through an optical cuvette of C. elegans … Continue reading “Dynamic Diffraction Analysis”<\/span><\/a><\/p>\n","protected":false},"author":912,"featured_media":0,"parent":872,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-560","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/pages.vassar.edu\/vaol\/wp-json\/wp\/v2\/pages\/560","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/pages.vassar.edu\/vaol\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/pages.vassar.edu\/vaol\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/pages.vassar.edu\/vaol\/wp-json\/wp\/v2\/users\/912"}],"replies":[{"embeddable":true,"href":"https:\/\/pages.vassar.edu\/vaol\/wp-json\/wp\/v2\/comments?post=560"}],"version-history":[{"count":19,"href":"https:\/\/pages.vassar.edu\/vaol\/wp-json\/wp\/v2\/pages\/560\/revisions"}],"predecessor-version":[{"id":960,"href":"https:\/\/pages.vassar.edu\/vaol\/wp-json\/wp\/v2\/pages\/560\/revisions\/960"}],"up":[{"embeddable":true,"href":"https:\/\/pages.vassar.edu\/vaol\/wp-json\/wp\/v2\/pages\/872"}],"wp:attachment":[{"href":"https:\/\/pages.vassar.edu\/vaol\/wp-json\/wp\/v2\/media?parent=560"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}