{"id":1995,"date":"2012-04-24T21:57:14","date_gmt":"2012-04-25T01:57:14","guid":{"rendered":"http:\/\/blogs.vassar.edu\/magnes\/?p=1995"},"modified":"2013-07-11T10:29:36","modified_gmt":"2013-07-11T14:29:36","slug":"the-finished-product","status":"publish","type":"post","link":"https:\/\/pages.vassar.edu\/magnes\/2012\/04\/24\/the-finished-product\/","title":{"rendered":"The Finished Structure of 3,3-dimethyl-2-butanol"},"content":{"rendered":"<p>Now that we&#8217;ve analyzed both the <img loading=\"lazy\" decoding=\"async\" src=\"https:\/\/pages.vassar.edu\/magnes\/wp-content\/ql-cache\/quicklatex.com-d12612c700f99e015f6937d86076b314_l3.png\" class=\"ql-img-inline-formula \" alt=\"&#94;&#123;&#49;&#125;\" title=\"Rendered by QuickLaTeX.com\" height=\"10\" width=\"5\" style=\"vertical-align: 5px;\"\/>H-NMR and the\u00a0<img loading=\"lazy\" decoding=\"async\" src=\"https:\/\/pages.vassar.edu\/magnes\/wp-content\/ql-cache\/quicklatex.com-da2979ed4cdf09c04247f6962db549d8_l3.png\" class=\"ql-img-inline-formula \" alt=\"&#94;&#123;&#49;&#51;&#125;\" title=\"Rendered by QuickLaTeX.com\" height=\"10\" width=\"13\" style=\"vertical-align: 5px;\"\/>C-NMR spectra, we can see how the results come together and give the structure of 3,3-dimethyl-2-butanol. \u00a0Below we bring back the two figures that show the labeled hydrogens and carbons of the molecule:<\/p>\n<p><a href=\"http:\/\/pages.vassar.edu\/magnes\/files\/2012\/04\/Slide33.png\"><img loading=\"lazy\" decoding=\"async\" class=\"alignnone size-full wp-image-2254\" src=\"http:\/\/pages.vassar.edu\/magnes\/files\/2012\/04\/Slide33.png\" alt=\"\" width=\"490\" height=\"378\" srcset=\"https:\/\/pages.vassar.edu\/magnes\/files\/2012\/04\/Slide33.png 490w, https:\/\/pages.vassar.edu\/magnes\/files\/2012\/04\/Slide33-300x231.png 300w, https:\/\/pages.vassar.edu\/magnes\/files\/2012\/04\/Slide33-388x300.png 388w\" sizes=\"auto, (max-width: 490px) 100vw, 490px\" \/><\/a><\/p>\n<p><a href=\"http:\/\/pages.vassar.edu\/magnes\/files\/2012\/04\/Slide44.png\"><img loading=\"lazy\" decoding=\"async\" class=\"alignnone size-full wp-image-2255\" src=\"http:\/\/pages.vassar.edu\/magnes\/files\/2012\/04\/Slide44.png\" alt=\"\" width=\"438\" height=\"410\" srcset=\"https:\/\/pages.vassar.edu\/magnes\/files\/2012\/04\/Slide44.png 438w, https:\/\/pages.vassar.edu\/magnes\/files\/2012\/04\/Slide44-300x280.png 300w, https:\/\/pages.vassar.edu\/magnes\/files\/2012\/04\/Slide44-320x300.png 320w\" sizes=\"auto, (max-width: 438px) 100vw, 438px\" \/><\/a><\/p>\n<p>If we did not already know the identity of the molecule, we could have determined it using only the four spectra previously shown&#8211;the\u00a0<img loading=\"lazy\" decoding=\"async\" src=\"https:\/\/pages.vassar.edu\/magnes\/wp-content\/ql-cache\/quicklatex.com-d12612c700f99e015f6937d86076b314_l3.png\" class=\"ql-img-inline-formula \" alt=\"&#94;&#123;&#49;&#125;\" title=\"Rendered by QuickLaTeX.com\" height=\"10\" width=\"5\" style=\"vertical-align: 5px;\"\/>H-NMR, the\u00a0<img loading=\"lazy\" decoding=\"async\" src=\"https:\/\/pages.vassar.edu\/magnes\/wp-content\/ql-cache\/quicklatex.com-da2979ed4cdf09c04247f6962db549d8_l3.png\" class=\"ql-img-inline-formula \" alt=\"&#94;&#123;&#49;&#51;&#125;\" title=\"Rendered by QuickLaTeX.com\" height=\"10\" width=\"13\" style=\"vertical-align: 5px;\"\/>C-NMR, the DEPT-90, and the DEPT-135&#8211;by following the guidelines laid out in the previous posts. \u00a0Peaks on the four spectra work together to give \u00a0bits of information about \u00a0pieces of the molecule, and those pieces are put back together at the end of the analysis.<\/p>\n<p>To summarize, we began by taking advantage of the magnetic properties of <img loading=\"lazy\" decoding=\"async\" src=\"https:\/\/pages.vassar.edu\/magnes\/wp-content\/ql-cache\/quicklatex.com-d12612c700f99e015f6937d86076b314_l3.png\" class=\"ql-img-inline-formula \" alt=\"&#94;&#123;&#49;&#125;\" title=\"Rendered by QuickLaTeX.com\" height=\"10\" width=\"5\" style=\"vertical-align: 5px;\"\/>H\u00a0and\u00a0<img loading=\"lazy\" decoding=\"async\" src=\"https:\/\/pages.vassar.edu\/magnes\/wp-content\/ql-cache\/quicklatex.com-da2979ed4cdf09c04247f6962db549d8_l3.png\" class=\"ql-img-inline-formula \" alt=\"&#94;&#123;&#49;&#51;&#125;\" title=\"Rendered by QuickLaTeX.com\" height=\"10\" width=\"13\" style=\"vertical-align: 5px;\"\/>C nuclei to learn about the environment of each nucleus in the molecule. \u00a0Radio waves were pulsed at the sample to record small changes in the resonant Larmor frequency of the nuclei. \u00a0The change happened because electrons around each nucleus became a current when influenced by the NMR&#8217;s external field, and generated their own fields in the opposite direction according to Lenz&#8217;s Law. \u00a0This new, effective magnetic field resulted in changes in the Larmor frequency of each nucleus. \u00a0It is these changes that are displayed on the spectra as chemical shifts. \u00a0The chemical shift is measured in ppm of the original Larmor frequency of the nucleus.<\/p>\n<p>Using the Larmor frequency equation below, and the shifted frequencies, we calculated the shielding factor <img loading=\"lazy\" decoding=\"async\" src=\"https:\/\/pages.vassar.edu\/magnes\/wp-content\/ql-cache\/quicklatex.com-218428ebbff86310fbdb1f7324215c46_l3.png\" class=\"ql-img-inline-formula \" alt=\"&#92;&#115;&#105;&#103;&#109;&#97;\" title=\"Rendered by QuickLaTeX.com\" height=\"8\" width=\"11\" style=\"vertical-align: 0px;\"\/> for each nucleus. \u00a0The shielding factor is another measure of the relative electron density around each nucleus.<\/p>\n<p class=\"ql-center-displayed-equation\" style=\"line-height: 38px;\"><span class=\"ql-right-eqno\"> (1) <\/span><span class=\"ql-left-eqno\"> &nbsp; <\/span><img loading=\"lazy\" decoding=\"async\" src=\"https:\/\/pages.vassar.edu\/magnes\/wp-content\/ql-cache\/quicklatex.com-e8cdafa2e06de8a0ecb1da3db9c52825_l3.png\" height=\"38\" width=\"129\" class=\"ql-img-displayed-equation \" alt=\"&#92;&#98;&#101;&#103;&#105;&#110;&#123;&#101;&#113;&#117;&#97;&#116;&#105;&#111;&#110;&#42;&#125; &#92;&#110;&#117;&#95;&#123;&#48;&#125;&#61;&#92;&#102;&#114;&#97;&#99;&#123;&#92;&#103;&#97;&#109;&#109;&#97;&#32;&#66;&#95;&#123;&#48;&#125;&#40;&#49;&#45;&#92;&#115;&#105;&#103;&#109;&#97;&#41;&#125;&#123;&#50;&#92;&#112;&#105;&#125; &#92;&#101;&#110;&#100;&#123;&#101;&#113;&#117;&#97;&#116;&#105;&#111;&#110;&#42;&#125;\" title=\"Rendered by QuickLaTeX.com\"\/><\/p>\n<p>Combining the information from the spectra gives the structure of 3,3-dimethyl-2-butanol, which is shown again below.<\/p>\n<p><a href=\"http:\/\/pages.vassar.edu\/magnes\/files\/2012\/04\/Slide54.png\"><img loading=\"lazy\" decoding=\"async\" class=\"alignnone size-full wp-image-2256\" src=\"http:\/\/pages.vassar.edu\/magnes\/files\/2012\/04\/Slide54.png\" alt=\"\" width=\"283\" height=\"208\" \/><\/a><\/p>\n<div>It is the ability of the NMR spectrometer to detect such small changes in resonant frequency, and convert them into data we can use to piece together molecular structures, that makes NMR spectroscopy so powerful and important in the research world.<\/div>\n","protected":false},"excerpt":{"rendered":"<p>Now that we&#8217;ve analyzed both the H-NMR and the\u00a0C-NMR spectra, we can see how the results come together and give the structure of 3,3-dimethyl-2-butanol. \u00a0Below we bring back the two figures that show the labeled hydrogens and carbons of the molecule: If we did not already know the identity of the molecule, we could have [&hellip;]<\/p>\n","protected":false},"author":912,"featured_media":0,"comment_status":"open","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[4101,64,29905],"tags":[],"class_list":["post-1995","post","type-post","status-publish","format-standard","hentry","category-advanced-em","category-michael","category-spring-2012"],"_links":{"self":[{"href":"https:\/\/pages.vassar.edu\/magnes\/wp-json\/wp\/v2\/posts\/1995","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/pages.vassar.edu\/magnes\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/pages.vassar.edu\/magnes\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/pages.vassar.edu\/magnes\/wp-json\/wp\/v2\/users\/912"}],"replies":[{"embeddable":true,"href":"https:\/\/pages.vassar.edu\/magnes\/wp-json\/wp\/v2\/comments?post=1995"}],"version-history":[{"count":27,"href":"https:\/\/pages.vassar.edu\/magnes\/wp-json\/wp\/v2\/posts\/1995\/revisions"}],"predecessor-version":[{"id":2402,"href":"https:\/\/pages.vassar.edu\/magnes\/wp-json\/wp\/v2\/posts\/1995\/revisions\/2402"}],"wp:attachment":[{"href":"https:\/\/pages.vassar.edu\/magnes\/wp-json\/wp\/v2\/media?parent=1995"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/pages.vassar.edu\/magnes\/wp-json\/wp\/v2\/categories?post=1995"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/pages.vassar.edu\/magnes\/wp-json\/wp\/v2\/tags?post=1995"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}